cadillo-lab

Publication Cadillo Lab

Please check the most updated publication list in google scholar:

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Microbial DNA sample preservation and possible artifacts for field-based research in remote tropical peatlands. Cadillo-Quiroz, H. and Reynolds, M. Methods X (submitted)	2022
Transcriptomic structure and response to pH stress of novel Methanoregulacea methanogens from peatlands. Browne, P, Li, Z., Chongle P., and Cadillo-Quiroz, H. (In submission)	2022
Pavia, M.J. *, Chede, A., Wu, Z., Cadillo-Quiroz, H., & Zhu, Q. (2022). Binarena: a dedicated interactive platform for human-guided exploration and binning of metagenomes. (submitted)	2022
Marine mineral-catalyzed NO and N₂O formation on the anoxic early Earth. Buessecker, S., H. Imanaka, T. Ely, R. Hu, S.J. Romaniello and H. Cadillo-Quiroz. *Nature Goesciences* (*Accepted*).	2022
Expansion of the global RNA virome reveals diverse clades of bacteriophages. Neri, U., Wolf, Y.I.,...... RNA Virus Discovery Consortium: H. Cadillo-Quiroz....Gophna, U. Cell, 185 (21), 4023-4037.e18	2022
Peatland core domain sets: building consensus on what should be measured in research and monitoring Reed MS, Young DM, Andersen R, Bell NGA, Cadillo-Quiroz, H, et al, 2022. Peat and Mire, Vol 28, article 26. doi: 10.19189/MaP.2021.OMB.StA.2340	2022
Delineating the drivers and functionality of methanogenic niches within an arid landfill. Reynolds, M., Finn, D., Sarno. A., Allen, R., Deathrage, D., Krajmalnik-Brown, Cadillo-Quiroz, H. Applied and Environmental Microbiology.Vol 8, No 9. DOI: https://doi.org/10.1128/aem.02438-21	2022
Coupled abiotic-biotic cycling of nitrous oxide in tropical peatlands. Buessecker, S. , Ostrom, N., Gücker, B., Urquiza-Muñoz, J., Penton, R., Pérez, A., Boëchat, I., Holbert, K., Panduro Pisco, G., Sarno, A. Fontanez Ortiz, M. and Reynolds, M. Cadillo-Quiroz, H. Nature Ecology and Evolution* (online first)	2022
Biogeosciences Perspectives on Integrated, Coordinated,Open, Networked (ICON) Science. Dwivedi, D., A.L.D. Santos, M.A. Barnard, T.M. Crimmins, A. Malhotra, K.A. Rod, K.S. Aho, S.M. Bell, B. Bomfim, F.Q. Brearley, H. Cadillo-Quiroz, et al., *Earth and Space Science*. https://doi.org/10.1029/2021EA002119	2022
A map of global peatland extent created using machine learning. Melton, J., Chan, E., Millard, K., Fortier, M., Winton, S., Martín-López, J.M., Cadillo-Quiroz, H., Kidd, H., and Verchot, L. *Geoscientific Model Development* , 15 (12): 4709–4738	2022
Water Vapor Adsorption Provides Daily, Sustainable Water to Soils of the Hyperarid Atacama Desert. Glaser, D., Hartnett, H., Finn, D., Perez-Montaño, S., Cadillo-Quiroz, H. and Desch S. Astrobiology, 22 (10). https://doi.org/10.1089/ast.2021.0171	2022
Detecting vulnerability of humid tropical forests to multiple stressors. Saatchi, S., Longo, M., Xu, L., Yang, Y., Abe, H., Andre, M Aukema, J., Carlvahais, N., Cadillo-Quiroz, H., …et al One Earth 4(7): 988-1003	2021
A versatile gas flux chamber reveals high tree stem methane emissions in Amazonian peatland. van Haren, J., Brewer, P., Kurtzberg, L., Weiss, R., Springer, V., Tello-Espinoza, R., Solignac Ruiz, J., Cadillo-Quiroz H. Agricultural Forestry and Meteorology* 307: 108504	2021
Microbial communities and interactions of nitrogen oxides with methanogenesis in diverse peatlands of the Amazon basin. Buessecker, S, Zamora , Z., Sarno, A., D. R. Finn , A. M. Hoyt , J. van Haren , J. D. Urquiza Muñoz , and Cadillo-Quiroz, H. Frontiers in Microbiology 12(1564).	2021
A genomic catalog of Earth's microbiomes. Nayfach, S. Roux S......IMG/M Data Consortium: H. Cadillo-Quiroz....Eloe-Fadrosh, E. Nature Biotechnology 39, pages499–509.	2020
Hydrometeorological sensitivities of net ecosystem carbon dioxide and methane exchange of an Amazonian palm swamp peatland Tim J Griffis, DT Roman, JD Wood, J Deventer, L Fachin, J Rengifo, D Del Castillo, E Lilleskov, R Kolka, RA Chimner, J del Aguila-Pasquel, C Wayson, K Hergoualc'h, JM Baker, H Cadillo-Quiroz, DM Ricciuto. Agricultural and Forest Meteorology 295, 108167	2020
Marine mineral-catalyzed NO and N2O formation on the anoxic early Earth Steffen Buessecker, Hiroshi Imanaka, Tucker Ely, Renyu Hu, Stephen J Romaniello, Hinsby Cadillo-Quiroz. EarthArXiv	2020
Methanogens and Methanotrophs Show Nutrient-Dependent Community Assemblage Patterns Across Tropical Peatlands of the Pastaza-Marañón Basin, Peruvian Amazonia Damien Robert Finn, Michal Ziv-El, Joost van Haren, Jin Gyoon Park, Jhon del Aguila-Pasquel, Jose David Urquiza–Muñoz, Hinsby Cadillo-Quiroz. Frontiers in Microbiology 11, 746	2020
Planetary Habitability Informed by Planet Formation and Exoplanet Demographics. D Apai, A Banzatti, NP Ballering, EA Bergin, A Bixel, T Birnstiel, M Bose, S Brittain, H. Cadillo-Quiroz,.....K. Wagner. BAAS 51 (3), 475	2019
Contrasting carbon sink and source activities in Amazonian and Arctic peatlands under a changing climate. Qianlai Zhuang, Outi Lähteenoja, Frederick Draper, Zicheng Yu, Scott Bridgham, Jason Keller, Hinsby Cadillo-Quiroz. Geophysical Research Abstracts 21	2019
Effects of sterilization techniques on chemodenitrification and N2O production in tropical peat soil microcosms. Steffen Buessecker, Kaitlyn Tylor, Joshua Nye, Keith E Holbert, Jose D Urquiza Muñoz, Jennifer B Glass, Hilairy E Hartnett, Hinsby Cadillo-Quiroz. Biogeosciences 16 (23), 4601-4612	2019
Potential shift from a carbon sink to a source in Amazonian peatlands under a changing climate. S Wang, Q Zhuang, O Lähteenoja, FC Draper, H Cadillo-Quiroz. Proceedings of the National Academy of Sciences 115 (49), 12407-12412	2018
Soil microbial community composition is correlated to soil carbon processing along a boreal wetland formation gradient. EJ Chapman, H Cadillo-Quiroz, DL Childers, MR Turetsky, MP Waldrop. European Journal of Soil Biology 82, 17-26	2017
Changes of community structure and abundance of methanogens in soils along a freshwater–brackish water gradient in subtropical estuarine marshes. C Tong, H Cadillo-Quiroz, ZH Zeng, CX She, P Yang, JF Huang. Geoderma 299, 101-110	2017
Endosymbiont diversity and evolution across the weevil tree of life. G Zhang, P Browne, G Zhen, A Johnston, H Cadillo-Quiroz, N Franz. bioRxiv, 171181	2017
Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments. P. Browne, H Tamaki, N Kyrpides, T Woyke, L Goodwin, H Imachi, S Bräuer, J B Yavitt, W Liu, S Zinder, H Cadillo-Quiroz. The ISME journal 11 (1), 87	2017
Factors regulating community composition of methanogens and sulfate-reducing bacteria in brackish marsh sediments in the Min River estuary, southeastern China. CX She, ZC Zhang, H Cadillo-Quiroz, C Tong. Estuarine, Coastal and Shelf Science 181, 27-38	2016
Complete genome sequence of Methanosphaerula palustris E1-9CT, a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland. H Cadillo-Quiroz, P Browne, N Kyrpides, T Woyke, L Goodwin, C Detter, J B Yavitt, S H Zinder. Genome Announc. 3 (6), e01280-15	2015
Exometabolite niche partitioning among sympatric soil bacteria. R Baran, E L Brodie, J Mayberry-Lewis, E Hummel, U Nunes Da Rocha, R Chakraborty, B P Bowen, U Karaoz, H Cadillo-Quiroz, F Garcia-Pichel, T R Northen. Nature Communications 6, 8289	2015
Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments. S Bräuer, H Cadillo-Quiroz, N Kyrpides, T Woyke, L Goodwin, C Detter, S Podell, J B Yavitt, S H Zinder. Microbiology 161 (8), 1572-1581	2015
Methanosphaerula. S Zinder, H Cadillo‐Quiroz. Bergey's Manual of Systematics of Archaea and Bacteria, 1-5	2015
Isolation of a significant fraction of non-phototroph diversity from a desert biological soil crust. U Nunes da Rocha, H Cadillo-Quiroz, U Karaoz, L Rajeev, N Klitgord, S Dunn, V Truong, M Buenrostro, B P Bowen, F Garcia-Pichel, A Mukhopadhyay, T R Northen, E L Brodie. Frontiers in microbiology 6, 277	2015
Complete genome sequence of Methanolinea tarda NOBI-1T, a hydrogenotrophic methanogen isolated from methanogenic digester sludge K Yamamoto, H Tamaki, H Cadillo-Quiroz, H Imachi, N Kyrpides, T Woyke, L Goodwin, S H Zinder, Y Kamagata, W Liu. Genome Announc. 2 (5), e00876-14	2014
Complete genome sequence of Methanoregula formicica SMSPT, a mesophilic hydrogenotrophic methanogen isolated from a methanogenic upflow anaerobic sludge blanket reactor K Yamamoto, H Tamaki, H Cadillo-Quiroz, H Imachi, N Kyrpides, T Woyke, L Goodwin, S H Zinder, Y Kamagata,W Liu. Genome Announc. 2 (5), e00870-14	2014
Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium lacus isolated from northern peatlands H Cadillo-Quiroz, SL Bräuer, N Goodson, JB Yavitt, SH Zinder. International journal of systematic and evolutionary microbiology 64 (5) 1473-1480	2014
Recombination shapes genome architecture in an organism from the archaeal domain DJ Krause, X Didelot, H Cadillo-Quiroz, RJ Whitaker. Genome biology and evolution 6 (1), 170-178	2014
Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales SD Bridgham, H Cadillo‐Quiroz, JK Keller, Q Zhuang. Global change biology 19 (5), 1325-1346	2013
Contribution of transcriptomics to systems-level understanding of methanogenic archaea P. Browne, H Cadillo-Quiroz. Archaea 2013	2013
Methanogen diversity and community composition in peatlands of the central to northern Appalachian Mountain region, North America JB Yavitt, E Yashiro, H Cadillo-Quiroz, SH Zinder. Biogeochemistry 109 (1-3), 117-131	2012
Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order … S Sakai, M Ehara, I-Cheng Tseng, T Yamaguchi, S L Bräuer, H Cadillo-Quiroz, S H Zinder, H Imachi. International journal of systematic and evolutionary microbiology 62 (6) 1389-1395	2012
Seasonal changes in methanogenesis and methanogenic community in three peatlands, New York State CL Sun, SL Brauer, H Cadillo Quiroz, SH Zinder, JB Yavitt. Frontiers in microbiology 3, 81	2012
Patterns of gene flow define species of thermophilic Archaea H Cadillo-Quiroz, X Didelot, N L Held, A Herrera, A Darling, M L Reno, D J Krause, R J Whitaker. PLoS biology 10 (2), e1001265	2012
A role for Dehalobacter spp. in the reductive dehalogenation of dichlorobenzenes and monochlorobenzene JL Nelson, JM Fung, H Cadillo-Quiroz, X Cheng, SH Zinder. Environmental science & technology 45 (16), 6806-6813	2011
Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog SL Bräuer, H Cadillo-Quiroz, RJ Ward, JB Yavitt, SH Zinder. International journal of systematic and evolutionary microbiology 61 (1), 45-52	2011
CRISPR associated diversity within a population of Sulfolobus islandicus NL Held, A Herrera, H Cadillo-Quiroz, RJ Whitaker. PLoS One 5 (9), e12988	2010
Diversity and community structure of Archaea inhabiting the rhizoplane of two contrasting plants from an acidic bog H Cadillo-Quiroz, JB Yavitt, SH Zinder, JE Thies. Microbial ecology 59 (4), 757-767	2010
T-REX: software for the processing and analysis of T-RFLP data SW Culman, R Bukowski, HG Gauch, H Cadillo-Quiroz, DH Buckley. BMC bioinformatics 10 (1), 171	2009
Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland H Cadillo-Quiroz, JB Yavitt, SH Zinder. International Journal of Systematic and Evolutionary Microbiology 59 (5) 928-935.	2009
Characterization of the archaeal community in a minerotrophic fen and terminal restriction fragment length polymorphism-directed isolation of a novel hydrogenotrophic methanogen H Cadillo-Quiroz, E Yashiro, JB Yavitt, SH Zinder. Appl. Environ. Microbiol. 74 (7), 2059-2068	2008
Soil–methanogen interactions in two peatlands (bog, fen) in Central New York State MD Dettling, JB Yavitt, H Cadillo-Quiroz, C Sun, SH Zinder. Geomicrobiology Journal 24 (3-4), 247-259	2007
Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA H Cadillo‐Quiroz, S Bräuer, E Yashiro, C Sun, J Yavitt, S Zinder. Environmental Microbiology 8 (8), 1428-1440	2006
Isolation of a novel acidiphilic methanogen from an acidic peat bog SL Bräuer, H Cadillo-Quiroz, E Yashiro, JB Yavitt, SH Zinder. Nature 442 (7099), 192	2006

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